Edgewall Software

Changes between Initial Version and Version 1 of Ticket #11207


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Timestamp:
Jun 17, 2013, 3:02:03 PM (7 years ago)
Author:
Jun Omae
Comment:

WrongTrac.

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  • Ticket #11207

    • Property Status newclosed
    • Property Resolutioninvalid
  • Ticket #11207 – Description

    initial v1  
    1 Using Seqan v. 1.4, I was trying to open a FASTQ file with SequenceStream using this pseudocode:
    2 
     1Using Seqan v. 1.4, I was trying to open a FASTQ file with `SequenceStream` using this pseudocode:
     2{{{#!cpp
    33#include <seqan/sequence.h>
    44#include <seqan/seq_io.h>
     
    4242  cout << endl;
    4343}
    44 
     44}}}
    4545But I end up with this output message:
    46 
     46{{{
    4747error reading file reads.fastq
    4848ERROR: Could not read from FASTA file
    49 
    50 The return statements are canceled to display all error messages. Obviously, there is something that makes SequenceStream believe that I want to open a FASTA file. But on the example page http://trac.seqan.de/wiki/Tutorial/BasicSequenceIO, there are files ending with .fq indicating that FASTQ files should work too.
     49}}}
     50The return statements are canceled to display all error messages. Obviously, there is something that makes `SequenceStream` believe that I want to open a FASTA file. But on the example page http://trac.seqan.de/wiki/Tutorial/BasicSequenceIO, there are files ending with .fq indicating that FASTQ files should work too.